PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv8_188310_mhzu.t1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family MIKC_MADS
Protein Properties Length: 240aa    MW: 27455.1 Da    PI: 10.0865
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv8_188310_mhzu.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.31.5e-311968150
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                        krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+
  Bv8_188310_mhzu.t1 19 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 68
                        79***********************************************8 PP

2K-box103.72.3e-34871875100
               K-box   5 sgks.leeakaeslqqelakLkkeienLqreq....RhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqee 90 
                         sg   ++ea+a+++qqe+akL+++i++  +++    Rh++Ge+L+sLs+keL++Le++Le+++++iRskKnell+++ie +qk+e el+++
  Bv8_188310_mhzu.t1  87 SGAGsVAEANAQYYQQEAAKLRNQIRTATENNrllsRHMMGEGLSSLSMKELKNLETKLERGISRIRSKKNELLFAEIEFMQKREIELHNN 177
                         3444499********************9966423338****************************************************** PP

               K-box  91 nkaLrkklee 100
                         n+ Lr+++ e
  Bv8_188310_mhzu.t1 178 NQFLRARISE 187
                         *****99875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-421170IPR002100Transcription factor, MADS-box
PROSITE profilePS5006634.0341171IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.88E-331283IPR002100Transcription factor, MADS-box
CDDcd002653.06E-441286No hitNo description
PRINTSPR004044.2E-331333IPR002100Transcription factor, MADS-box
PROSITE patternPS0035001367IPR002100Transcription factor, MADS-box
PfamPF003198.8E-272067IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-333348IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-334869IPR002100Transcription factor, MADS-box
PfamPF014865.1E-2395185IPR002487Transcription factor, K-box
PROSITE profilePS5129713.95997191IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048440Biological Processcarpel development
GO:0048443Biological Processstamen development
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MEGSPSSQRK MGRGKIEIKR IENTTNRQVT FCKRRNGLLK KAYELSVLCD AEVALIVFSS  60
RGRLYEYANH SVKGTIDRYK KACSDQSGAG SVAEANAQYY QQEAAKLRNQ IRTATENNRL  120
LSRHMMGEGL SSLSMKELKN LETKLERGIS RIRSKKNELL FAEIEFMQKR EIELHNNNQF  180
LRARISENER AQQSMSLMPG GSDYDLVPSQ SFDSRNYFQV NALQPSSQYA RQDQTPLQLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P5e-211179169Myocyte-specific enhancer factor 2B
1tqe_Q5e-211179169Myocyte-specific enhancer factor 2B
1tqe_R5e-211179169Myocyte-specific enhancer factor 2B
1tqe_S5e-211179169Myocyte-specific enhancer factor 2B
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00609ChIP-seqTransfer from AT4G18960Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0830990.0DQ083099.1 Beta vulgaris Me341 (Me341) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010687170.11e-178PREDICTED: floral homeotic protein AGAMOUS isoform X2
SwissprotQ408721e-134AG_PANGI; Floral homeotic protein AGAMOUS
TrEMBLA0A0J8BV391e-178A0A0J8BV39_BETVU; Uncharacterized protein
STRINGVIT_10s0003g02070.t011e-127(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-111MIKC_MADS family protein